Stevenson, R. J., Y. Pan, K. Manoylov, C. Parker, D. Larsen, and A. Herlihy. 2008. Development of diatom indicators of ecological condition for streams of the Western United States. Journal of North American Benthological Society 27:1000-1016. pdf

Weilhoefer, C.L. and Y. Pan. 2008. Using change-point analysis and weighted averaging approaches to explore the relationships between common benthic diatoms and in-stream environmental variables in Mid-Atlantic Highlands streams, USA. Hydrobiologia 614:259-274. pdf

Weilhoefer, C.L.,Y. Pan, and S. Eppard. 2008. The effects of river floodwaters on floodplain wetland water quality and diatom assemblages. Wetlands 28: 473-486 pdf

Weilhoefer, C.L. and Y. Pan. 2007. Relationships between diatoms and environmental variables in wetlands in the Willamette Valley, Oregon, USA. Wetlands 27: 668-682.pdf

Weilhoefer,C.L. and Y. Pan. 2007. A comparison of periphyton assemblages generated by two sampling protocols. Journal of North American Benthological Society 26:308-318.pdf

Weilhoefer, C.L. and Y. Pan. 2006. Diatom-based bioassessment in wetlands:  how many samples do we need to adequately characterize the diatom assemblage in a wetland? Wetlands 26:793-802.pdf

Pan, Y., B. H. Hill, P. Husby, R. K. Hall, and P. R. Kaufmann. 2006. Relationships between environmental variables and benthic diatom assemblages in California Central Valley streams, USA.  Hydrobiologia 561:119-130.pdf

Walker, C. and Y. Pan. 2006. Using diatom assemblages to assess urban stream conditions. Hydrobiologia 561:179-189.pdf

Weilhoefer, C.L. and Y. Pan. 2006. Diatom assemblages and their associations with environmental variables in Oregon coastal streams, USA. Hydrobiologia 561:207-219.pdf

Naymik, J., Y. Pan, and J. Ford. 2005. Diatom assemblages as indicators of timber harvest effects in coastal Oregon streams. Journal of The North American Benthological Society 24:569-584.pdf

Pan, Y., A. T. Herlihy, P. R. Kaufmann, J. Wigington, J. Van Sickle, and T. Moser. 2004. Linkages between land-use, water quality, physical habitat conditions, and lotic diatom assemblages: A multi-spatial scale assessment. Hydrobiologia 515: 59-73.pdf

Qian, S. S., Y. Pan, and R. S. King. 2004. Soil total phosphorus threshold in the Everglades: a Bayesian changepoint analysis for multinomial response data. Ecological Indicators 4:29-37.pdf